Vision plot

validate_anatomical_plane

 validate_anatomical_plane (anatomical_plane)

Ensure anatomical_plane is either 0, 1, or 2.

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show_med_img

 show_med_img (im, ctx, channel:int, slice_index:int,
               anatomical_plane:int,
               voxel_size:(<class'int'>,<class'list'>), ax=None,
               figsize=None, title=None, cmap=None, norm=None,
               aspect=None, interpolation=None, alpha=None, vmin=None,
               vmax=None, origin=None, extent=None,
               interpolation_stage=None, filternorm=True, filterrad=4.0,
               resample=None, url=None, data=None, **kwargs)

*Show an image on ax. This is a modified code from the fastai function show_image.

Args: im: The input image. ctx: The context. channel: Channel of the image. slice_index: Index of the 2D slice. anatomical_plane: Anatomical plane of the image. voxel_size: Voxel size for the image. ax: Axis for the plot. figsize: Figure size for the plot. title: Title for the plot. kwargs: Additional parameters for plt.Axes.imshow method.

Returns: Axis with the plot.*

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find_max_slice

 find_max_slice (mask_data, anatomical_plane)

Find slice index based on mask